Waters | Nonlinear Dynamics

Progenesis QI for proteomics

The next generation in LC-MS proteomics data analysis software.
Discover the significantly changing proteins in your samples.

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How can I align my samples automatically?

Allowing Progenesis to align your runs automatically is the most objective and quickest way of aligning your data.

To run the automatic alignment process:

  1. Once your data has imported, click Section Complete to display the Alignment processing wizard:
    Alignment processing wizard
  2. Select the method for choosing the alignment reference and click Next.
  3. In the next page, select Yes, automatically align my runs and click Finish.
  4. The automatic alignment will start, displaying a progress bar:
    Progress shown for the automatic processing of runs
  5. Once complete, the progress window will notify you, detailing how long the alignment took, the name of the alignment reference run, and how many of the runs aligned successfully:
    Progress completed, with a report of the results

See also