Progenesis LC-MS FAQs
Setting up
- What PC specification do I need to run Progenesis LC-MS?
- Why is it better to run Progenesis LC-MS on a 64-bit operating system?
- What file formats, data types and instrument types are supported?
- What is new in the latest version?
Alignment
Analysis
- How does normalistion work in Progenesis LC-MS?
- Do I need to filter out MS1 data to control for outliers and for normalisation to work?
- How does normalisation behave where peptide ions significantly altered in their abundance are derived from proteins which do not express any changes in their abundance?
- Why does Progenesis LC-MS quantify before identifying?
- How do "same peptide" outlines work in Progenesis LC-MS?
- How do I use tags?
- How are the abundances calculated?
- What are data compression and peak modelling and why do you do this?
- What search engines and databases are supported?
- How do I run an MS/MS ion search?
- What inclusion list formats are supported?
