Support for PLGS v2.3
About this plug-in
Note, an alternative plugin is available for versions 2.5 and 2.4.
This plugin allows you to import peptide identification results from Waters MSá´± data generated by ProteinLynx Global Server (PLGS).
Before analysing samples in PLGS you should first us its automation options to make sure it will produce final peptide files.
- Open Tools|Automation Setup
- Spectra Output
- Apex3D
- Ion Accounting Output
- ensure "final_peptide" is ticked and select the output folder
You can then load the Waters RAW folders directly into PLGS. Load results into Progenesis LC-MS by finding and importing the final peptide reports from the output folder selected above, there should be one file for every sample analysed.