Nonlinear Dynamics: A Waters Company

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Progenesis LC-MS

A unique approach for label-free LC-MS data analysis
Quantify and identify the significant proteins in your experiment…

Support for PLGS v2.3

Download PLGS v2.3

About this plug-in

Note, an alternative plugin is available for versions 2.5 and 2.4.

This plugin allows you to import peptide identification results from Waters MSá´± data generated by ProteinLynx Global Server (PLGS).

Before analysing samples in PLGS you should first us its automation options to make sure it will produce final peptide files.

  • Open Tools|Automation Setup
  • Spectra Output
  • Apex3D
  • Ion Accounting Output
  • ensure "final_peptide" is ticked and select the output folder

You can then load the Waters RAW folders directly into PLGS. Load results into Progenesis LC-MS by finding and importing the final peptide reports from the output folder selected above, there should be one file for every sample analysed.

See also